​Han, S., Tan, C., Ding, J., Wang, J., Ma’ayan, A., and Gouon-Evans, V. (2018). Endothelial cells instruct liver specification of embryonic stem cell-derived endoderm through endothelial VEGFR2 signaling and endoderm epigenetic modifications. Stem Cell Research, accepted.
Kim, K.-Y., Tanaka, Y., Su, J., Cakir, B., Xiang, Y., Patterson, B., Ding, J., Jung, Y.-W., Kim, J.-H., Hysolli, E., Lee, H., Dajani, R., Kim, J., Zhong, M., Lee, J.-H., Skalnik, D., Lim, J.M., Sullivan, G., Wang, J., and Park, I.-H. (2018). Uhrf1 regulates active transcriptional marks at bivalent domains in pluripotent stem cells through Setd1a. Nature Communications, accepted.
Wang, J., Wu, X., Wei, C., Huang, X., Ma, Q., Huang, X., Faiola, F., Guallar, D., Fidalgo, M., Huang, T., Peng, D., Chen, L., Yu, H., Li, X., Sun, J., Liu, X., Cai, X., Chen, X., Wang, L., Ren, J., Wang, J.*, and Ding, J.* (2018). YY1 positively regulates transcription by targeting promoters and super-enhancers through the BAF complex in embryonic stem cells. Stem Cell Reports 10(4):1324-1339. PMID:29503092. (*Corresponding authors)
Guallar D., Bi, X., Pardavilam, J.A., Huang, X., Saenz, C., Shi, X., Zhou, H., Faiola, F., Ding, J., Haruehanroengra, P., Yang, F., Li, D., Sanchez-Priego, C., Saunders, A., Pan, F., Valdes, V.J., Kelley, K., Blanco, M.G., Chen, L., Wang, H., Sheng, J., Xu, M., Fidalgo M., Shen, X., and Wang, J. (2018). RNA-dependent chromatin targeting of Tet2 for endogenous retrovirus control in pluripotent stem cells. Nature Genetics 50(3):443-451. PMID:29483655.
Zhang, Y., Xiang, Y., Yin, Q., Du, Z., Peng, X., Wang, Q., Fidalgo, M., Xia, W., Li, Y., Zhao, Z., Zhang, W., Ma, J., Xu, F., Wang, J., Li, L., and Xie, W. (2017). Dynamic epigenomic landscapes during early lineage specification in mouse embryos. Nature Genetics 50, 96-105. PMID: 29203909.
Esteban, M.A. and Wang, J. (2017). Editorial overview: Cell reprogramming: Carpe diem. Curr. Opin. Genet. Dev. 46:iv-vi. PMID:28969756.
Huang, X.#, Balmer, S.#, Yang, F., Fidalgo, M., Li, D., Guallar, D., Hadjantonakis, A.-K.*, Wang, J.* (2017). Zfp281 is essential for epiblast maturation through transcriptional and epigenetic control of Nodal signaling in the mouse embryo. eLife 6. pii: e33333. doi: 10.7554/eLife.33333.  PMID:29168693. (*Corresponding authors)
Faiola, F., Yin, N., Fidalgo, M., Huang, X., Saunders, A., Ding, J., Guallar, D., Dang, B., and Wang, J. (2017). NAC1 regulates somatic cell reprogramming by conrolling Zeb1 and E-cadherin expression. Stem Cell Reports  9 (3): 913-926. PMID: 28781078.
Huang, X., and Wang, J. (2017). Mitotic bookmarking: maintaining the stem cell identity during mitosis. Cell Stem Cell 20, 741-742. PMID: 28575687.
Huang, X., and Wang, J. (2017). ​A determined "hesitation" on H3K27me3 empowers stem cells to differentiate. Molecular Cell 66, 165–166. PMID: 28431228.
Saunders, A.#, Li, D.#, Faiola, F., Huang, X., Fidalgo, M., Guallar, D., Ding, J., Yang, F., Xu, Y., Zhou, H., and Wang, J. (2017). Context-dependent functions of NANOG phosphorylation in pluripotency and reprogramming. Stem Cell Reports 8(5):1115-1123. PMID: 28457890 
Pan, F., Wingo, T.S., Zhao, Z., Street, C., Yu, M., Qu, G., Ortega, J.R., Li, L., Faiola, F., Li, L., Nguyen, L., Wang, J., Makishima, H., Chen, S., Weeks, O., Liu, S., Maciejewski, J.P., Ni, H., Wang, J., He, C., Li, G.-M., Aifantis, I., Yang, F.-C., Jin, P., and Xu, M. (2017). Tet2 loss leads to hypermutagenicity in haematopoietic stem/progenitor cells. Nature Communications 8:15102. doi: 10.1038/ncomms15102. PMID: 28440315.
Saunders, A., Huang, X., Fidalgo, M., Reimer, M., Faiola, F., Ding, J., Sanchez-Priego, C., Guallar, D., Saenz. C.,  Li, D., and Wang, J. (2017). The SIN3A/HDAC corepressor complex functionally cooperates with NANOG in promoting pluripotency. Cell Reports 18, 1713-1726.  PMID: 28199843.
Fidalgo, M., Huang, X., Guallar, D., Sanchez-Priego, C., Valdes, V.J., Saunders, A., Ding, J., Wu, W.-S., Clavel, C., and Wang, J. (2016). Zfp281 coordinates opposing functions of Tet1 and Tet2 in pluripotent states. Cell Stem Cell 19(3):355-69. PMID: 27345836.
Yang, J., Guo, R., Wang, H., Ye, X., Zhou, Z., Dan, J., Wang, H., Gong, P., Deng, W., Yin, Y., Mao, S., Wang, L., Ding, J., Li, J., Keefe, D.L., Dawlaty, M.M., Wang, J., Xu, G., and Liu, L. (2016). Tet enzymes regulate telomere maintenance and chromosomal stability of mouse ESCs. Cell Reports 15, 1809-1821. PMID: 27184841.
Guallar D., and Wang J. (2016). Taking the RISC of exiting naive pluripotency. Genome Biology 17, 104-107.
​Luo, S., Lu, J.Y., Liu, L., Yin, Y., Chen, C., Han, X., Wu, B., Xu, R., Liu, W., Yan, P., Shao, W., Lu, Z., Li, H., Na, J., Tang, F., Wang, J., Zhang, Y.E., and Shen, X. (2016). Divergent lncRNAs regulate gene expression and lineage differentiation in pluripotent cells. Cell Stem Cell 18 (5), 637-652. PMID: 26996597.
Aguilo, F., Zhang, F., Sancho, A., Fidalgo, M., Cecilia, S.D., Vashisht, A., Lee, D.-F., Chen, C.-H., Rengasamy, M., Andino, B., Jahouh, F., Roman, A., Krig, S.R., Wang, R., Zhang, W., Wohlschlegel, J.A., Wang, J., and Walsh, M.J. (2015). Coordination of m6A mRNA methylation and gene transcription by ZFP217 regulates pluripotency and reprogramming. Cell Stem Cell 17(6), 689-704. PMID: 26526723.​
Ding, J., Huang, X., Shao, N., Zhou, H., Lee, D.-F., Faiola, F., Fidalgo, M., Guallar, D., Saunders, A., Shliaha, P.V., Wang, H., Waghray, A., Papatsenko, D., Sánchez-Priego, C., Li, D., Yuan, Y., Lemischka, I.R., Shen, L., Kelley, K., Deng, H., Shen, X., and Wang, J. (2015). Tex10 coordinates epigenetic control of super-enhancer activity in pluripotency and reprogramming. Cell Stem Cell 16(6), 653-668. PMID: 25936917.
Dietrich, P.A., Yang, C., Leung, H.H.L., Lynch, J.R., Gonzales, E., Liu, B., Haber, M., Norris, M.D., Wang, J., and Wang, J.Y. (2014). GPR84 sustains aberrant β-catenin signaling in leukemic stem cells for maintenance of MLL leukemogenesis. Blood 124(22), 3284-94. PMID: 25293777. 
Gingold, J.A.#, Fidalgo, M.#, Guallar, D., Lau, Z., Sun, Z., Zhou, H., Faiola, F., Huang, X., Lee, D.-F., Waghray, A., Schaniel, C., Felsenfeld, D.P., Lemischka, I.R.*, and Wang, J.* (2014). A genome-wide RNAi screen identifies opposing functions of Snai1 and Snai2 on the Nanog dependency in reprogramming. Molecular Cell 56(1), 140-152. (Cover Image). PMID: 25240402. (*Corresponding authors)
Huang, X. and Wang, J. (2014). The extended pluripotency protein interactome and its links to reprogramming. Current Opinion in Genetics & Development 28, 16–24. PMID: 25173149
Guallar, D. and Wang, J. (2014). RNA-binding proteins in pluripotency, differentiation and reprogramming. Frontiers in Biology 9(5), 389-409. PMID: 25554730.
Saunders, A. and Wang J. (2014). Export and Expression: mRNAs Deliver New Messages for Controlling Pluripotency. Cell Stem Cell 14(5), 549-550. PMID: 24792108.
Faiola, F., Saunders, A., Dang, B., and Wang, J. (2014). An improved in vivo biotinylation strategy combined with FLAG and antibody based approaches for affinity purification of protein complexes in mouse embryonic stem cells. Methods in Molecular Biology 1177 (Protein Affinity Tags-Methods and Protocols), Chapter 11, 135-149.
Saunders, A. and Wang J. (2013). Pursuing self-renewal and pluripotency with the stem cell factor Nanog. Stem Cells 31(7), 1227-1236. PMID: 23653415.
Yap, K.L., Sysa-Shah, P. Bolon, B., Wu, R.-C., Gao, M., Herlinger, A.L., Wang, F., Faiola, F., Huso, D., Gabrielson, K., Wang, T.-L., Wang, J.*, Shih, I.M.*,  (2013). Loss of NAC1 expression is associated with defective bony patterning in the murine vertebral axis. PLOS One 8(7):e69099. PMID: 23922682. (*Corresponding authors)
Costa, Y.#, Ding, J.#, Theunissen, T.W.#, Faiola, F.#, Hore, T. A., Shliaha, P.V., Fidalgo, M., Saunders, A., Lawrence, M., Dietmann, S., Das, S., Levasseur, D.N., Li, Z., Xu, M., Reik, W., Silva, J.C.R.*, and Wang, J.* (2013). NANOG-dependent function of TET1 and TET2 in establishment of pluripotency. Nature 495, 370-374. PMID: 23395962. (*Corresponding authors)
MacArthur, B.D., Sevilla, A., Lenz, M., Muller, F.-J., Schuldt, B.M., Schuppert, A.A., Ridden, S.J., Stumpf, P.S., Fidalgo, M., Ma'ayan, A., Wang, J., and Lemischka, I.R. (2012). Nanog-dependent feedback loops regulate murine embryonic stem cell heterogeneity. Nat. Cell Biol 14(11), 1139-1147. PMID: 23103910.
Fidalgo, M., Faiola, F., Pereira, C.-F., Ding, J., Saunders, A., Gingold, J., Schaniel, C., Lemischka, I.R., Silva, J., and Wang, J. (2012). Zfp281 mediates Nanog autorepression through recruitment of the NuRD complex and inhibits somatic cell reprogramming. Proc. Natl. Acad. Sci. USA  109(40), 16202-16207. PMID: 22988117.
Ando K., Kernan, J.L., Liu, P.H., Sandra, T., Logette, E., Tschopp, J., Look, A. T., Wang, J., Bouchier-Hayes, L., and Sidi, S. (2012). PIDD death-domain phosphorylation by ATM determines prodeath versus prosurvival PIDDosome. Molecular Cell 47, 681-693. PMID: 22854598.  
Yap, K.L., Fraley, S.I., Thiaville, M.M., Jinawath, N., Nakayama, K., Wang, J., Wang, T.-L., Wirtz, D., Shih, I.M. (2012). NAC1 is an actin-binding protein that is essential for effective cytokinesis in cancer cells. Cancer Res. 72, 4085–4096. PMID: 22761335.
Wang, J. (2012). Deciphering protein complexes and protein interaction networks for stem cell pluripotency. New Frontiers of Network Analysis in Systems Biology (Edited by A. Ma'ayan and B. MacArthur), Chapter 6, 97-118. 
Ding, J., Xu, H., Faiola, F., Ma’ayan, A., and Wang, J. (2012). Oct4 links multiple epigenetic pathways to the pluripotency network. Cell Research 22, 155-167. PMID: 22083510. PMCID:PMC3252465
Fidalgo, M., Shekar, P.C., Ang, Y.S., Fujiwara, Y., Orkin, S.H., and Wang, J. (2011). Zfp281 functions  as a transcriptional repressor for pluripotency of mouse embryonic stem cells. Stem cells 29 (11), 1705-1716. PMID: 21915945.
Ang, Y.S., Tsai, S.Y., Lee, D.F., Monk, J., Su, J., Ratnakumar, K., Ding, J., Ge, Y., Darr, H., Chang, B., Wang, J., Rendl, M., Bernstein, E., Schaniel, C., Lemischka, I.R. (2011). Wdr5 mediates self-renewal and reprogramming via the embryonic stem cell core transcriptional network. Cell 145, 183-197. PMID: 21477851.
Wang, J. (2010). Efficient gene knockdowns in mouse embryonic stem cells using microRNA-based shRNAs. Methods in Molecular Biology 650, 241-256. PMID: 20686956.
Wang, J.*, Cantor, A.B., and Orkin, S.H. (2009). Tandem affinity purification of protein complexes in mouse embryonic stem cells using in vivo biotinylation. Current Protocols in Stem Cell Biology 1B.5.1-1B.5.17 (*Corresponding author). PMID: 19306258. PMCID: PMC2782545.
Kim, J., Cantor, A.B., Orkin, S.H., and Wang, J. (2009). Use of in vivo biotinylation both protein-protein and protein-DNA interaction networks in mouse embryonic stem cells. Nature Protocols 4, 506-517. PMID: 19325547.
stem cell